FFPE sample spatial transcriptomics service

Service Overview

Formalin-fixed paraffin-embedded (FFPE) samples, the most commonly used preservation format in clinical pathology, are a time capsule of invaluable biological information. However, the severe RNA degradation and protein-nucleic acid crosslinking caused by fixation have long blocked conventional technologies from accessing this wealth of information.
BMKMANU FFPE spatial transcriptomics innovatively adopts a proprietary direct poly(A) capture technology together with a patented de-crosslinking solution, precisely overcoming the key challenges of RNA degradation and protein-nucleic acid crosslinking. With high specificity and broad applicability, it offers a new approach for mining information from FFPE samples across all species.

Workflow

Service Advantages

All Species, Full Capture

No probe design or synthesis needed and no species restriction; captures all mRNA

Focus on Original mRNA

Retains the specificity and comprehensiveness of polyA capture; avoids the non-specificity of random primers

Patented De-crosslinking Technology

BMKMANU's in-house FFPE de-crosslinking technology releases mRNA to the greatest extent possible

High Resolution, Accurate Cell Segmentation

BMKMANU S3000:2.5μm/per spot;Spotnumber:~414W;
resolution:3.5μm

Benchmark Data

To date the technology has been validated on human clinical FFPE samples including skin, bladder and oesophageal cancer, confirming its stability and technical feasibility across sample types. It will provide powerful and reliable support for in-depth analysis of the tumour microenvironment, screening of disease biomarkers and large-scale retrospective clinical studies.

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