bmkmanu


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2023-09-19

Bmk_Space_mapping.R Operating Process

Open the script file “`markdown source(‘xxx’) # ‘xxx’ script path, for example ‘C:/Users/R/Desktop/qq.R’ “` Create a Seurat object and generate a spatial clustering plot – `FilePath`: […]
2023-07-24

BMKMANU S1000 Spatial Transcriptomics Cell Segmentation Demo Data

Data Statistics Table 1. Sequencing Reads Statistics Type Number Percent(%) Number of Reads 337,531,256 Valid Barcodes 316,152,592 93.67 Valid UMIs 335,911,164 99.52 Final Valid Reads 316,136,080 […]
2023-07-21

BMKManu S-Series Spatial Transcriptomics Cell Segmentation Demo — Download

This file contains two things: 1) how to download the raw data; 2) how to download the result files already produced by BSTMatrix. 1. Raw data […]
2023-07-21

BMK Releases a Cross-Species PBMC Dataset Covering 7 Species and 14 Samples!

BMKManu DG1000 single-cell PBMC dataset At the start of 2023, BMK Manufacturing released PBMC data for 7 species (oyster, Sebastes schlegelii, yellow catfish, soft-shelled turtle, chicken, […]
2023-07-05

BMK S-Series Spatial Transcriptomics Cell Segmentation Demo Data — Results

Data Statistics Table 1. Sequencing Reads Statistics Type Number Percent(%) Number of Reads 1,338,426,735 Valid Barcodes 1,262,816,067 94.35​ Valid UMIs ​1,329,064,839​ 99.3​ Final Valid Reads 1,262,615,019 […]
2023-05-05

BMKMANU S1000 Mouse Testis Demo Data — Results

【Data Information】 Sequencing Platform: Illumina Sample Type: mouse testis section Release Date: 2023/4/26 【Demo Data Results】 1, Sequencing read statistics are shown in the table below: […]
2022-11-23

BMKManu DG1000 Human PBMC Sequencing Data Details

Sequencing read statistics Sequencing read statistics are shown in the table below: Type Values Number of Reads 399,967,594 Valid Barcodes 339,047,468 Valid UMIs 395,738,572 Notes: Number […]
2022-11-23

BMKMANU S1000 Mouse Embryo Head Demo Data — Results

[su_box title=”Data Information” style=”soft”]Sequencing Platform: Illumina Sample Type: mouse embryo head Release Date: 2022-11-22 Update Date: 2022-11-22[/su_box]   Demo Data Results 1. Sequencing Reads Statistics Table […]
2022-09-27

BSTMatrix ONT Pipeline User Guide

1. Software Dependencies and Installation Dependencies: python: version 9, with the cv2 module (version 4.0 or above), Cython, numpy and seaborn installed Minimap2 Samtools: version 2 or […]